rm wrong file

edit net a bit
This commit is contained in:
lukas-heiligenbrunner 2022-07-11 23:36:07 +02:00
parent 0f0c789981
commit 3b4ef675ad
4 changed files with 44 additions and 19 deletions

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@ -80,17 +80,17 @@ def get_image_loader(path: str, precision: np.float32 or np.float64):
transform_chain=transforms.Compose([transforms.RandomHorizontalFlip(), transform_chain=transforms.Compose([transforms.RandomHorizontalFlip(),
transforms.RandomVerticalFlip()]), transforms.RandomVerticalFlip()]),
precision=precision) precision=precision)
#
image_dataset_augmented = ImageDataset(path, # image_dataset_augmented = ImageDataset(path,
offsetrange=(0, 8), # offsetrange=(0, 8),
spacingrange=(2, 6), # spacingrange=(2, 6),
transform_chain=transforms.Compose([transforms.RandomHorizontalFlip(), # transform_chain=transforms.Compose([transforms.RandomHorizontalFlip(),
transforms.RandomVerticalFlip(), # transforms.RandomVerticalFlip(),
transforms.GaussianBlur(3, 4)]), # transforms.GaussianBlur(3, 4)]),
precision=precision) # precision=precision)
# merge different datasets here! # merge different datasets here!
merged_dataset = torch.utils.data.ConcatDataset([image_dataset, image_dataset_augmented]) merged_dataset = torch.utils.data.ConcatDataset([image_dataset])
totlen = len(merged_dataset) totlen = len(merged_dataset)
test_set_size = .1 test_set_size = .1

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@ -48,13 +48,22 @@ def train_model():
print(f"Epoch {epoch}/{n_epochs}\n") print(f"Epoch {epoch}/{n_epochs}\n")
i = 0 i = 0
for input_tensor, mask, target_tensor in train_loader: for input_tensor, mask, target_tensor in train_loader:
input_tensor = input_tensor.to(device)
mask = mask.to(device)
target_tensor = target_tensor.to(device)
optimizer.zero_grad() # reset gradients optimizer.zero_grad() # reset gradients
input_tensor = torch.cat((input_tensor, mask), 1) input_tensor = torch.cat((input_tensor, mask), 1)
output = nn(input_tensor.to(device)) # get model output (forward pass) output = nn(input_tensor) # get model output (forward pass)
loss = loss_function(output.to(device), output_flat = output * (1 - mask)
target_tensor.to(device)) # compute loss given model output and true target output_flat = output_flat[1 - mask > 0]
rest = target_tensor * (1 - mask)
rest = rest[1 - mask > 0]
loss = loss_function(output_flat, rest) # compute loss given model output and true target
loss.backward() # compute gradients (backward pass) loss.backward() # compute gradients (backward pass)
optimizer.step() # perform gradient descent update step optimizer.step() # perform gradient descent update step
@ -101,7 +110,14 @@ def eval_model(model: torch.nn.Module, dataloader: torch.utils.data.DataLoader,
input = torch.cat((input, mask), 1) input = torch.cat((input, mask), 1)
out = model(input) out = model(input)
loss += loss_fn(out, target).item()
out = out * (1 - mask)
out = out[1 - mask > 0]
rest = target * (1 - mask)
rest = rest[1 - mask > 0]
loss += loss_fn(out, rest).item()
print(f'\rEval prog[{i}/{len(dataloader) * dataloader.batch_size}]', end='') print(f'\rEval prog[{i}/{len(dataloader) * dataloader.batch_size}]', end='')
i += dataloader.batch_size i += dataloader.batch_size
print() print()
@ -112,9 +128,9 @@ def eval_model(model: torch.nn.Module, dataloader: torch.utils.data.DataLoader,
def plot(inputs, targets, predictions, path, update, epoch): def plot(inputs, targets, predictions, path, update, epoch):
"""Plotting the inputs, targets and predictions to file `path`""" """Plotting the inputs, targets and predictions to file `path`"""
os.makedirs(path, exist_ok=True) os.makedirs(path, exist_ok=True)
fig, axes = plt.subplots(ncols=3, figsize=(15, 5)) fig, axes = plt.subplots(ncols=4, figsize=(15, 5))
for ax, data, title in zip(axes, [inputs, targets, predictions], ["Input", "Target", "Prediction"]): for ax, data, title in zip(axes, [inputs, targets, predictions, predictions-targets], ["Input", "Target", "Prediction", "diff"]):
ax.clear() ax.clear()
ax.set_title(title) ax.set_title(title)
ax.imshow(DataLoader.postprocess(np.transpose(data[:3, :, :], (1, 2, 0))), interpolation="none") ax.imshow(DataLoader.postprocess(np.transpose(data[:3, :, :], (1, 2, 0))), interpolation="none")

12
Net.py
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@ -7,18 +7,24 @@ from torch import nn
class ImageNN(torch.nn.Module): class ImageNN(torch.nn.Module):
def __init__(self, precision: np.float32 or np.float64, n_in_channels: int = 1, n_hidden_layers: int = 3, def __init__(self, precision: np.float32 or np.float64, n_in_channels: int = 1, n_hidden_layers: int = 3,
n_kernels: int = 32, kernel_size: int = 7): n_kernels: int = 32, kernel_size: int = 9):
"""Simple CNN with `n_hidden_layers`, `n_kernels`, and `kernel_size` as hyperparameters""" """Simple CNN with `n_hidden_layers`, `n_kernels`, and `kernel_size` as hyperparameters"""
super().__init__() super().__init__()
ksize = kernel_size
cnn = [] cnn = []
for i in range(n_hidden_layers): for i in range(n_hidden_layers):
cnn.append(torch.nn.Conv2d( cnn.append(torch.nn.Conv2d(
in_channels=n_in_channels, in_channels=n_in_channels,
out_channels=n_kernels, out_channels=n_kernels,
kernel_size=kernel_size, kernel_size=ksize,
padding=int(kernel_size / 2) padding=int(ksize / 2),
padding_mode="replicate"
)) ))
kernel_size -= 2
cnn.append(torch.nn.ReLU()) cnn.append(torch.nn.ReLU())
n_in_channels = n_kernels n_in_channels = n_kernels
self.hidden_layers = torch.nn.Sequential(*cnn) self.hidden_layers = torch.nn.Sequential(*cnn)

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@ -36,7 +36,10 @@ def eval_evalset():
piclen = len(b['input_arrays']) piclen = len(b['input_arrays'])
for input_array, known_array in zip(b['input_arrays'], b['known_arrays']): for input_array, known_array in zip(b['input_arrays'], b['known_arrays']):
input_array = DataLoader.preprocess(input_array, precision=np.float32) input_array = DataLoader.preprocess(input_array, precision=np.float32)
input_tensor = torch.cat((torch.from_numpy(input_array), torch.from_numpy(known_array)), 0)
input_array = np.expand_dims(input_array, 0)
known_array = np.expand_dims(known_array, 0)
input_tensor = torch.cat((torch.from_numpy(input_array), torch.from_numpy(known_array)), 1)
out = model(input_tensor) out = model(input_tensor)
out = DataLoader.postprocess(out.cpu().detach().numpy()) out = DataLoader.postprocess(out.cpu().detach().numpy())